D5.2 Phylogenetic Diversity

Bibtex

@misc{1acf7d38-a4dc-4c21-948c-fe57e138d744,
title = "D5.2 Phylogenetic Diversity",
abstract = "We developed and released the R-package pdindicatoR to produce phylogenetic diversity maps and calculate a phylogenetic diversity indicator based on species occurrence cubes and phylogenetic trees. The produced maps show the spatial distribution of phylogenetic diversity as well as the location of protected areas, and they can for example be used to inform policymakers and as a planning tool for conservation managers. The software includes functions to match tree tip labels with the Open Tree Taxonomy (OTT) and with the species in the occurrence cube based on the GBIF taxonKey, calculate phylogenetic diversity metrics, generate PD maps, and calculate a PD indicator. Documentation and example workflows are provided. The tool will be tested on the case studies of WP6 and further refined based on user feedback.",
author = "Lissa Breugelmans and Louise A Hendrickx and Quentin Groom and Joe Miller and Ward Langeraert and Shawn Dove and Hanno Seebens and Michele Di Musciano and Duccio Rocchini and Maarten Trekels",
year = "2024",
month = nov,
day = "30",
doi = "",
language = "Nederlands",
publisher = "Instituut voor Natuur- en Bosonderzoek",
address = "België,
type = "Other"
}

Auteurs